Mol Cell 2013,49(3):427–438.PubMedCentralSotrastaurin PubMedCrossRef 11. Liang W, Malhotra A, Deutscher MP: Acetylation regulates the stability of a bacterial protein: growth stage-dependent

modification of RNase R. Mol Cell 2011,44(1):160–166.PubMedCentralPubMedCrossRef 12. Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, et al.: Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 2005,433(7025):531–537.PubMedCrossRef 13. Karzai AW, Sauer RT: Protein factors associated with the SsrA.SmpB tagging and ribosome Ruxolitinib cost rescue complex. Proc Natl Acad Sci USA 2001,98(6):3040–3044.PubMedCentralPubMedCrossRef 14. Liang W, Deutscher MP: Ribosomes regulate the stability and action of RNase R. J Biol Chem 2013,288(48):34791–34798.PubMedCrossRef 15. Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B: A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 1999,17(10):1030–1032.PubMedCrossRef 16. Datsenko KA, Wanner BL: One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 2000,97(12):6640–6645.PubMedCentralPubMedCrossRef VS-4718 17. Murakami KS, Darst SA: Bacterial RNA polymerases: the wholo story. Curr Opin Struct Biol 2003,13(1):31–39.PubMedCrossRef

18. Cox J, Mann M: MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 2008,26(12):1367–1372.PubMedCrossRef

19. Strader MB, Hervey WJ, Costantino N, Fujigaki S, Chen CY, Akal-Strader A, Ihunnah CA, Makusky AJ, Court DL, Markey SP, et al.: A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12. J Proteome Res 2013,12(3):1289–1299.PubMedCrossRef 20. Charollais J, Dreyfus M, Iost I: CsdA, a cold-shock RNA helicase from Escherichia coli , is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res Liothyronine Sodium 2004,32(9):2751–2759.PubMedCentralPubMedCrossRef 21. Awano N, Xu C, Ke H, Inoue K, Inouye M, Phadtare S: Complementation analysis of the cold-sensitive phenotype of the Escherichia coli csdA deletion strain. J Bacteriol 2007,189(16):5808–5815.PubMedCentralPubMedCrossRef 22. Ge Z, Mehta P, Richards J, Karzai AW: Non-stop mRNA decay initiates at the ribosome. Mol Microbiol 2010,78(5):1159–1170.PubMedCentralPubMedCrossRef 23. Condon C: Maturation and degradation of RNA in bacteria. Curr Opin Microbiol 2007,10(3):271–278.PubMedCrossRef 24. Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, Hearn J, Emili A, Xie XS: Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 2010,329(5991):533–538.PubMedCentralPubMedCrossRef 25.