Infect Immun 2010, 78:5214–5222.PubMedCrossRef 35. Bailey MJ, Hughes C, Koronakis V: In vitro recruitment of the RfaH regulatory protein into a specialised transcription complex, directed by the nucleic acid ops element. Mol Gen Genet 2000, 262:1052–1059.PubMedCrossRef 36. Naville M, Ghuillot-Gaudeffroy A, Marchais A, Gautheret D: ARNold: a web tool for the prediction of Rho-independent transcription terminators. RNA Biol 2011, 8:11–13.PubMedCrossRef 37. Hawley DK, McClure WR: Compilation and analysis see more of Escherichia coli promoter DNA sequences. Nucleic Acids Res 1983,

11:2237–2255.PubMedCrossRef 38. Clinical and Laboratory Standards Institute: Performance standards for NVP-BGJ398 supplier antimicrobial susceptibility testing. 21th informational supplement. Clinical and Laboratory Standards, Wayne, Pa; 2011. 39. Woodford N, Tierno PM, Young K, Tysall L, Palepou MF, Ward E, Painter RE, Suber check details DF, Shungu D, Silver LL, Inglima K, Kornblum J, Livermore DM: Outbreak of Klebsiella pneumoniae producing a new carbapenem-hydrolyzing class A beta-lactamase, KPC-3, in a New York Medical Center. Antimicrob Agents

Chemother 2004, 48:4793–4799.PubMedCrossRef 40. Almeida LG, Paixao R, Souza RC, Costa GC, Barrientos FJ, Santos MT, Almeida DF, Vasconcelos AT: A System for Automated Bacterial (genome) Integrated Annotation–SABIA. Bioinformatics 2004, 20:2832–2833.PubMedCrossRef 41. Yu NY, Wagner JR, Laird MR, Melli of G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS: PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 2010, 26:1608–1615.PubMedCrossRef 42. Krogh A, Larsson B, von Heijne G, Sonnhammer EL: Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305:567–580.PubMedCrossRef 43. Jones DT: Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999, 292:195–202.PubMedCrossRef 44. Sullivan

MJ, Petty NK, Beatson SA: Easyfig: a genome comparison visualizer. Bioinformatics 2011, 27:1009–1010.PubMedCrossRef 45. Coimbra RS, Artiguenave F, Jacques LS, Oliveira GC: MST (molecular serotyping tool): a program for computer-assisted molecular identification of Escherichia coli and Shigella O antigens. J Clin Microbiol 2010, 48:1921–1923.PubMedCrossRef 46. Coimbra RS, Grimont F, Grimont PA: Identification of Shigella serotypes by restriction of amplified O-antigen gene cluster. Res Microbiol 1999, 150:543–553.PubMedCrossRef 47. Coimbra RS, Grimont F, Lenormand P, Burguiere P, Beutin L, Grimont PA: Identification of Escherichia coli O-serogroups by restriction of the amplified O-antigen gene cluster (rfb-RFLP). Res Microbiol 2000, 151:639–654.PubMedCrossRef 48.