Cells were maintained in Dulbecco’s modified Eagle’s minimal esse

Cells were maintained in Dulbecco’s modified Eagle’s minimal essential medium (Invitrogen, Frederick, MD) supplemented with 10% fetal bovine serum (Hyclone, Logan, UT). Stat1 constructs (Stat1α and Stat1β) were a kind gift from Dr D. Levy, New York University Medical Center, NY. Stat1α-Y701F, Stat1α-S727A, Stat1α-Y701F/S727A and Stat1β-Y701F were ZD1839 generated by site-directed mutagenesis using the QuikChange mutagenesis

kit (Agilent, Santa Clara, CA). Constructs were subcloned into the pcDNA 3.1+ plasmid which carries the hygromycin resistance gene (Invitrogen). Transfections were carried out using Lipofectamine LTX (Invitrogen) according to the manufacturer’s protocols. Stable transfectants were selected and maintained in medium supplemented with 400 μg/ml of hygromycin (Invitrogen). All constructs were verified by sequencing (Genewiz, South Plainfield, NJ). Cells were stimulated with mouse IFN-γ (100 μ/ml; Peprotech, Rocky Hill, NJ) for 24 hr and whole-cell protein extracts were prepared with the addition of protease inhibitors (Roche Diagnostics, Nutley, NJ) and phosphatase

inhibitor cocktails 1 and 2 (Sigma-Aldrich, St. Louis, MO). Protein quantification was carried out using the bicinchoninic acid (BCA) assay (Pierce, Rockford, IL). For Western blotting to detect GILT protein, 5 μg/lane of protein extract was loaded onto 15% sodium dodecyl sulphate (SDS)-polyacrylamide gels. Proteins were transferred onto poly(vinylidene difluoride) BKM120 mouse (PVDF) membranes. Primary antibodies used for detection were GILT (rabbit polyclonal antiserum; M. Maric), actin (Sigma-Aldrich), total STAT1 Dichloromethane dehalogenase (Cell Signaling, Danvers, MA). Anti-rabbit horseradish peroxidase (HRP)-conjugated secondary antibody (Jackson Immunoresearch, West Grove, PA) was used. Detection was carried out using the ECL plus reagent (PerkinElmer,

Gwaitham, MA). The sequences of the 5′ biotinylated oligonucleotides (IDT, San Diego, CA) used for the DNA affinity precipitation assay (DAPA) were as follows: STAT1 GAS Site Probe 1, GCGGAGCCTTCAGGAAAGGAGTCCCAGG and STAT1 GAS Site Probe 2, CACACTCAGTTGCTGGAAGCAAGTACCTCA; and the non-biotinylated oligonucleotides used were Stat1 consensus, TCGAGCCTGATTTCC-CCGAAATGAGGC and p53, TCCGAACAAGTCCGGGCATATGT. Complementary oligonucleotides were mixed with the above-mentioned sequences and annealed. Five-hundred micrograms of whole-cell lysate was incubated with 900 pmol of biotinylated oligonucleotide, and the complex was immunoprecipitated using streptavidin-conjugated agarose beads (Millipore, Temecula, CA), based on a previously described protocol.12 Oligonucleotide competition assays were performed using either a 10-fold or a 50-fold excess of nonbiotinylated DNA oligonucleotides. Proteins were eluted from streptavidin-conjugated agarose beads and analyzed by Western blotting, after SDS-PAGE (12% gel).

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